Phylogeography of North American mountain bromes

Alicia N Massa; Steven R Larson

doi:10.2979/NPJ.2005.6.1.29

References

1. Avise JC.
2000. Phylogeography: the history and formation of species. Cambridge (MA): Harvard University Press. 447 p.
1. Bailey RG.
1996. Ecosystem geography. New York (NY): Springer. 204 p.
1. Benham J,
2. Jeung J-U,
3. Jasieniuk M,
4. Kanazin V,
5. Blake T.
1999. Genographer: a tool for automated AFLP and microsatellite analysis. Journal of Agricultural Genomics 4.
1. Excoffier L,
2. Smouse PE,
3. Quattro JM.
1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479–491.
OpenUrl PubMed Web of Science
1. Harlan JR.
1938. A survey of the genetic variability in the Bromus carinatus complex [PhD dissertation]. Berkeley (CA): University of California.
1. Harlan JR.
1945. Cleistogamy and chasmogamy in Bromus carinatus Hook. and Arn.American Journal of Botany 32:66–72.
OpenUrl CrossRef Web of Science
1. Hitchcock AS,
2. Chase A.
1951. Manual of the grasses of the United States. Second Edition.Washington (DC): US Department of Agriculture. Miscellaneous Publication No. 200.
1. Hitchcock CJ,
2. Cronquist A,
3. Ownbey M.
1969. Vascular plants of the Pacific Northwest. Part 1:Vascular cryptograms, gymnosperms, and monocotyledons. Seattle (WA): University of Washington Press. 914 p.
1. [ITIS] Integrated Taxonomic Information System.
2001. URL: http://www.itis.usda.gov (accessed 23 Jul 2003).
1. Jones TA,
2. Nielson DC,
3. Arredondo JT,
4. Redinbaugh MG.
2003. Characterization of diversity among 3 squirreltail taxa. Journal of Range Management 56:474–482.
OpenUrl
1. Larson SR,
2. Jones TA,
3. Hu Z-M,
4. McCracken CL,
5. Palazzo A.
2000. Genetic diversity of bluebunch wheatgrass cultivars and a multiple-origin polycross. Crop Science 40:1142–1147.
OpenUrl CrossRef Web of Science
1. Larson SR,
2. Cartier E,
3. McCracken CL,
4. Dyer D.
2001a. Mode of reproduction and AFLP variation in purple needlegrass (Nassella pulchra): utilization of natural germplasm sources. Molecular Ecology 10:1165–1178.
OpenUrl CrossRef PubMed
1. Larson SR,
2. Waldron BL,
3. Monsen SB,
4. St John L,
5. Palazzo AJ,
6. McCracken CL,
7. Harrison RD.
2001b. AFLP variation in agamospermous and dioecious blue-grasses of western North America. Crop Science 41:1300–1305.
OpenUrl CrossRef Web of Science
1. Larson SR,
2. Palazzo AJ,
3. Jensen KB.
2003a. Identification of western wheatgrass cultivars and accessions by DNA fingerprinting and geographic provenance. Crop Science 43:394–401.
OpenUrl Web of Science
1. Larson SR,
2. Jones TA,
3. McCracken CL,
4. Jensen KB.
2003b. Amplified fragment length polymorphism in E. elymoides, E. multisetus, and other Elymus taxa. Canadian Journal of Botany 81:789–804.
OpenUrl
1. Larson SR,
2. Jones TA,
3. Jensen KB.
2004. Population structure in Pseudoroegneria spicata (Poaceae:Triticeae) modeled by Bayesian clustering of AFLP genotypes. American Journal of Botany 91.
1. Mantel NA
1967.The detection of disease clustering and a generalized regression approach. Cancer Research 27:209–220.
OpenUrl Abstract/FREE Full Text
1. Massa A,
2. Zappe AH,
3. Gandullo R,
4. Acuna H,
5. Seguel I.
1997. Collecting Bromus L. in the Patagonia Andes. Plant Genetic Resources Newsletter 110:1–4.
OpenUrl
1. Massa AN,
2. Larson SR,
3. Jensen KB,
4. Hole DJ.
2001.AFLP variation in Bromus section Ceratochloa germplasm of Patagonia. Crop Science 41:1609–1616.
OpenUrl
1. Massa AN,
2. Jensen KB,
3. Larson SR,
4. Hole DJ
2004. Morphological variation in Bromus section Ceratochloa germplasm of Patagonia. Canadian Journal of Botany 82:136–144.
OpenUrl
1. Math Forum.
1997. URL: http://www.mathforum.com/dr.math/problems/longandlat.html (accessed 23 Jul 2003).
1. May KW,
2. Stout DG,
3. Willms WD,
4. Mir WD,
5. Coulman B,
6. Fairey NA,
7. Hall JW.
1998. Growth and forage quality of three Bromus species native to western Canada. Canadian Journal of Plant Science 78:597–603.
OpenUrl
1. May KW,
2. Willms WD,
3. Stout DG,
4. Coulman B,
5. Fairey NA,
6. Hall JW.
1999. Seed yield of three Bromus species native to western Canada. Canadian Journal of Plant Science 79:551–555.
OpenUrl
1. Nei M,
2. Li WH.
1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Sciences, USA 76:5269–5273.
OpenUrl Abstract/FREE Full Text
1. Noller GL,
2. Scheetz J,
3. Majerus M,
4. Ogle D,
5. Holzworth L.
2000. Release notice of Garnet germplasm mountain brome, Bromus marginatus. Available at http://plant-materials.nrcs.usda.gov/pubs/copmcrnbrma4.pdf (verified 28 Sep 2004).
1. Pavlick LE.
1995. Bromus L. of North America.Victoria, British Columbia: Royal British Columbia Museum. 160 p.
1. Petit RJ,
2. Aguinagalde I,
3. de Beaulieu J-L,
4. Bittkau C,
5. Brewer S,
6. Cheddadi R,
7. Ennos R,
8. Fineschi S,
9. Grivet D,
10. Lascoux M,
11. Mohanty A,
12. Muller-Starck G,
13. Demesure-Musch B,
14. Palme A,
15. Martin JP,
16. Rendell S,
17. Vendramin GG.
2003. Glacial refugia: hotspots but not melting pots of genetic diversity. Science 300:1563–1565.
OpenUrl Abstract/FREE Full Text
1. Rohlf FJ.
1993. NTSYS-pc. Numerical taxonomy and multivariate analysis system (version 2.02). Setauket (NY): Execter Publisher Ltd.
1. Stebbins GL.
1947.The origin of the complex Bromus carinatus and its phylogeographical implications. Contributions from the Gray Herbarium of Harvard University 165:42–55.
OpenUrl
1. Stebbins GL,
2. Togby HA.
1944.The cytogenetics of hybrids in Bromus. I. Hybrids within the section Ceratochloa.American Journal of Botany 31:1–11.
OpenUrl CrossRef
1. Swofford DL.
1998. PAUP*. Phylogenetic analysis using parsimony (* and other methods).Version 4. Sunderland (MA): Sinaur Associates.
1. Vos P,
2. Hogers R,
3. Bleeker M,
4. Reijans M,
5. Van de Lee T,
6. Hornes M,
7. Frijters A,
8. Pot L,
9. Peleman J,
10. Kuiper M,
11. Zabeau M.
1995.AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research 23:4407–4414.
OpenUrl Abstract/FREE Full Text

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Keywords

[1] Avise JC.
2000. Phylogeography: the history and formation of species. Cambridge (MA): Harvard University Press. 447 p.

[2] Avise JC.

[3] Bailey RG.
1996. Ecosystem geography. New York (NY): Springer. 204 p.

[4] Bailey RG.

[5] Benham J,
Jeung J-U,
Jasieniuk M,
Kanazin V,
Blake T.
1999. Genographer: a tool for automated AFLP and microsatellite analysis. Journal of Agricultural Genomics 4.

[6] Benham J,

[7] Jeung J-U,

[8] Jasieniuk M,

[9] Kanazin V,

[10] Blake T.

[11] Excoffier L,
Smouse PE,
Quattro JM.
1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479–491.
OpenUrl PubMed Web of Science

[12] Excoffier L,

[13] Smouse PE,

[14] Quattro JM.

[15] Harlan JR.
1938. A survey of the genetic variability in the Bromus carinatus complex [PhD dissertation]. Berkeley (CA): University of California.

[16] Harlan JR.

[17] Harlan JR.
1945. Cleistogamy and chasmogamy in Bromus carinatus Hook. and Arn.American Journal of Botany 32:66–72.
OpenUrl CrossRef Web of Science

[18] Harlan JR.

[19] Hitchcock AS,
Chase A.
1951. Manual of the grasses of the United States. Second Edition.Washington (DC): US Department of Agriculture. Miscellaneous Publication No. 200.

[20] Hitchcock AS,

[21] Chase A.

[22] Hitchcock CJ,
Cronquist A,
Ownbey M.
1969. Vascular plants of the Pacific Northwest. Part 1:Vascular cryptograms, gymnosperms, and monocotyledons. Seattle (WA): University of Washington Press. 914 p.

[23] Hitchcock CJ,

[24] Cronquist A,

[25] Ownbey M.

[26] [ITIS] Integrated Taxonomic Information System.
2001. URL: http://www.itis.usda.gov (accessed 23 Jul 2003).

[27] [ITIS] Integrated Taxonomic Information System.

[28] Jones TA,
Nielson DC,
Arredondo JT,
Redinbaugh MG.
2003. Characterization of diversity among 3 squirreltail taxa. Journal of Range Management 56:474–482.
OpenUrl

[29] Jones TA,

[30] Nielson DC,

[31] Arredondo JT,

[32] Redinbaugh MG.

[33] Larson SR,
Jones TA,
Hu Z-M,
McCracken CL,
Palazzo A.
2000. Genetic diversity of bluebunch wheatgrass cultivars and a multiple-origin polycross. Crop Science 40:1142–1147.
OpenUrl CrossRef Web of Science

[34] Larson SR,

[35] Jones TA,

[36] Hu Z-M,

[37] McCracken CL,

[38] Palazzo A.

[39] Larson SR,
Cartier E,
McCracken CL,
Dyer D.
2001a. Mode of reproduction and AFLP variation in purple needlegrass (Nassella pulchra): utilization of natural germplasm sources. Molecular Ecology 10:1165–1178.
OpenUrl CrossRef PubMed

[40] Larson SR,

[41] Cartier E,

[42] McCracken CL,

[43] Dyer D.

[44] Larson SR,
Waldron BL,
Monsen SB,
St John L,
Palazzo AJ,
McCracken CL,
Harrison RD.
2001b. AFLP variation in agamospermous and dioecious blue-grasses of western North America. Crop Science 41:1300–1305.
OpenUrl CrossRef Web of Science

[45] Larson SR,

[46] Waldron BL,

[47] Monsen SB,

[48] St John L,

[49] Palazzo AJ,

[50] McCracken CL,

[51] Harrison RD.

[52] Larson SR,
Palazzo AJ,
Jensen KB.
2003a. Identification of western wheatgrass cultivars and accessions by DNA fingerprinting and geographic provenance. Crop Science 43:394–401.
OpenUrl Web of Science

[53] Larson SR,

[54] Palazzo AJ,

[55] Jensen KB.

[56] Larson SR,
Jones TA,
McCracken CL,
Jensen KB.
2003b. Amplified fragment length polymorphism in E. elymoides, E. multisetus, and other Elymus taxa. Canadian Journal of Botany 81:789–804.
OpenUrl

[57] Larson SR,

[58] Jones TA,

[59] McCracken CL,

[60] Jensen KB.

[61] Larson SR,
Jones TA,
Jensen KB.
2004. Population structure in Pseudoroegneria spicata (Poaceae:Triticeae) modeled by Bayesian clustering of AFLP genotypes. American Journal of Botany 91.

[62] Larson SR,

[63] Jones TA,

[64] Jensen KB.

[65] Mantel NA
1967.The detection of disease clustering and a generalized regression approach. Cancer Research 27:209–220.
OpenUrl Abstract/FREE Full Text

[66] Mantel NA

[67] Massa A,
Zappe AH,
Gandullo R,
Acuna H,
Seguel I.
1997. Collecting Bromus L. in the Patagonia Andes. Plant Genetic Resources Newsletter 110:1–4.
OpenUrl

[68] Massa A,

[69] Zappe AH,

[70] Gandullo R,

[71] Acuna H,

[72] Seguel I.

[73] Massa AN,
Larson SR,
Jensen KB,
Hole DJ.
2001.AFLP variation in Bromus section Ceratochloa germplasm of Patagonia. Crop Science 41:1609–1616.
OpenUrl

[74] Massa AN,

[75] Larson SR,

[76] Jensen KB,

[77] Hole DJ.

[78] Massa AN,
Jensen KB,
Larson SR,
Hole DJ
2004. Morphological variation in Bromus section Ceratochloa germplasm of Patagonia. Canadian Journal of Botany 82:136–144.
OpenUrl

[79] Massa AN,

[80] Jensen KB,

[81] Larson SR,

[82] Hole DJ

[83] Math Forum.
1997. URL: http://www.mathforum.com/dr.math/problems/longandlat.html (accessed 23 Jul 2003).

[84] Math Forum.

[85] May KW,
Stout DG,
Willms WD,
Mir WD,
Coulman B,
Fairey NA,
Hall JW.
1998. Growth and forage quality of three Bromus species native to western Canada. Canadian Journal of Plant Science 78:597–603.
OpenUrl

[86] May KW,

[87] Stout DG,

[88] Willms WD,

[89] Mir WD,

[90] Coulman B,

[91] Fairey NA,

[92] Hall JW.

[93] May KW,
Willms WD,
Stout DG,
Coulman B,
Fairey NA,
Hall JW.
1999. Seed yield of three Bromus species native to western Canada. Canadian Journal of Plant Science 79:551–555.
OpenUrl

[94] May KW,

[95] Willms WD,

[96] Stout DG,

[97] Coulman B,

[98] Fairey NA,

[99] Hall JW.

[100] Nei M,
Li WH.
1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Sciences, USA 76:5269–5273.
OpenUrl Abstract/FREE Full Text

[101] Nei M,

[102] Li WH.

[103] Noller GL,
Scheetz J,
Majerus M,
Ogle D,
Holzworth L.
2000. Release notice of Garnet germplasm mountain brome, Bromus marginatus. Available at http://plant-materials.nrcs.usda.gov/pubs/copmcrnbrma4.pdf (verified 28 Sep 2004).

[104] Noller GL,

[105] Scheetz J,

[106] Majerus M,

[107] Ogle D,

[108] Holzworth L.

[109] Pavlick LE.
1995. Bromus L. of North America.Victoria, British Columbia: Royal British Columbia Museum. 160 p.

[110] Pavlick LE.

[111] Petit RJ,
Aguinagalde I,
de Beaulieu J-L,
Bittkau C,
Brewer S,
Cheddadi R,
Ennos R,
Fineschi S,
Grivet D,
Lascoux M,
Mohanty A,
Muller-Starck G,
Demesure-Musch B,
Palme A,
Martin JP,
Rendell S,
Vendramin GG.
2003. Glacial refugia: hotspots but not melting pots of genetic diversity. Science 300:1563–1565.
OpenUrl Abstract/FREE Full Text

[112] Petit RJ,

[113] Aguinagalde I,

[114] de Beaulieu J-L,

[115] Bittkau C,

[116] Brewer S,

[117] Cheddadi R,

[118] Ennos R,

[119] Fineschi S,

[120] Grivet D,

[121] Lascoux M,

[122] Mohanty A,

[123] Muller-Starck G,

[124] Demesure-Musch B,

[125] Palme A,

[126] Martin JP,

[127] Rendell S,

[128] Vendramin GG.

[129] Rohlf FJ.
1993. NTSYS-pc. Numerical taxonomy and multivariate analysis system (version 2.02). Setauket (NY): Execter Publisher Ltd.

[130] Rohlf FJ.

[131] Stebbins GL.
1947.The origin of the complex Bromus carinatus and its phylogeographical implications. Contributions from the Gray Herbarium of Harvard University 165:42–55.
OpenUrl

[132] Stebbins GL.

[133] Stebbins GL,
Togby HA.
1944.The cytogenetics of hybrids in Bromus. I. Hybrids within the section Ceratochloa.American Journal of Botany 31:1–11.
OpenUrl CrossRef

[134] Stebbins GL,

[135] Togby HA.

[136] Swofford DL.
1998. PAUP*. Phylogenetic analysis using parsimony (* and other methods).Version 4. Sunderland (MA): Sinaur Associates.

[137] Swofford DL.

[138] Vos P,
Hogers R,
Bleeker M,
Reijans M,
Van de Lee T,
Hornes M,
Frijters A,
Pot L,
Peleman J,
Kuiper M,
Zabeau M.
1995.AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research 23:4407–4414.
OpenUrl Abstract/FREE Full Text

[139] Vos P,

[140] Hogers R,

[141] Bleeker M,

[142] Reijans M,

[143] Van de Lee T,

[144] Hornes M,

[145] Frijters A,

[146] Pot L,

[147] Peleman J,

[148] Kuiper M,

[149] Zabeau M.

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